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The PISF offers several software solutions for our users. We host several commercial and open source mass spectrometery search engines and offer workstations for individual data analysis. Many of the workstations can be reserved using our on-line scheduler.

Proteomics Search Engine Servers:

  • Mascot 2.2 (MatrixScience)
  • SageN Sorcerer (SEQUEST) with ScaffoldBatch and Mascot integration
    • This server is currently unavailable
  • MassMatrix (for protein IDs, cross-link identification, N15 quantitation and iTRAQ)
  • X!Tandem
  • SpectrumMill
Workstation Software:
  • BioWorks 3.3.1 (two workstations available for reservation)
  • Scaffold
  • Scaffold Q+ (for iTRAQ/TMT quantitation)
  • Mass Profiler Professional (Genespring)
  • GPMAW
  • Hardklor
  • Data Explorer
  • XTract
  • ProSightPC 2.0 Workstation
  • SIEVE 1.1.0 Automated Label-Free Differential Analysis
  • PROMASS Deconvolution 2.5

We host several in-house RAID-array network storage devices to store user data and analysis. We also host an Access Grid node for videoconferencing and collaboration. Visit the Access Grid site to find a node near your collaborators.

 

Please contact us at proteomics at uic.edu if you have any questions about these software tools.
 

The PISF was established by a grant from The Searle Funds at the Chicago Community Trust to the Chicago Biomedical Consortium.

For more information about Proteomics and Informatics Services, email proteomics at uic.edu.
Copyright 2009 by CBC/UIC-RRC